Archive · 2026 · October 2026

Daily digest — 2026-10-02

2026-10-02

Eight science items led by a Nav1.7 pain lead, new HDAC8 and brain-targeted degraders, a p300/CBP perspective and co-folding virtual screening, plus two business stories: Sanofi–Regeneron's $1B antibody expansion and Lilly's amylin–tirzepatide data.

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Medicinal Chemistry

7 articles

Native MS Shows PROTAC Linker Length and Warhead Identity Shape Ternary Complexes Differently

  • Ion mobility, surface-induced dissociation and variable-temperature ESI were combined to probe BRD4–PROTAC–VCB complexes built with two BET ligands (JQ1 and I-BET726) and PEG linkers of different lengths.
  • Shorter linkers held complexes in more extended shapes; longer, flexible linkers allowed relaxed, native-like conformations.
  • JQ1 complexes tended to eject the PROTAC under collision, while tighter-binding I-BET726 complexes retained it; the two also melted differently.
💡 Points

Linker optimization is still mostly empirical, so orthogonal readouts of how architecture shapes the complex interface are welcome. Gas-phase data are not solution cooperativity, and I'd not rank degraders by them alone, but pairing them with cellular degradation could help rationalize why two warheads behave so differently. A preprint, so treat the conclusions as provisional until peer review.

Native Mass Spectrometry Reveals Distinct Effects of Linker Length and Targeting-Ligand Identity on PROTAC Ternary Complexes ↗

A Quinazoline Nav1.7 Lead, Absolute Configuration Fixed by MicroED, Shows Oral Analgesia in Rodents

  • Starting from a modest focused-library quinazoline hit, SAR across about twenty analogs gave a chiral lead with sub-micromolar potency and clear selectivity over Nav1.5.
  • The absolute configuration was assigned by MicroED, so the active enantiomer is unambiguous without large crystals.
  • The lead had acceptable oral exposure, reduced pain behavior in two rodent models, and was clean in a 44-target off-panel; Nav1.7-knockout neuron controls support on-target action.
💡 Points

Nav1.7 has burned a lot of programs on selectivity and translation, so a clean off-target panel plus knockout-neuron controls is what I'd look at first. Potency is still modest and the dose needed is high, so this is a starting scaffold rather than a candidate. The practical takeaway is MicroED: assigning chirality from nanocrystals of an early lead saves weeks of enantiomer chasing.

Discovery of a Quinazoline-Based Nav1.7 Inhibitor with MicroED-Confirmed Absolute Configuration and Oral Efficacy in Rodent Models of Neuropathic Pain ↗

p300/CBP Drug Discovery: Do Bifunctional Degraders Now Beat Classical Inhibitors?

  • A perspective reviewing small-molecule inhibitors of the p300/CBP bromodomain and catalytic (HAT) domain, with emphasis on how the leading clinical compounds were optimized.
  • It then follows the field's shift toward bifunctional proximity-inducing molecules, including PROTAC degraders.
  • The article compares what each modality offers for these large, multidomain coactivators.
💡 Points

p300/CBP is a good test of when degradation earns its molecular weight: scaffolding functions that inhibitors leave intact are exactly what a degrader removes. The HAT-domain and bromodomain optimization stories are useful reading for anyone with a stubborn chromatin target. I'd read the degrader sections skeptically on paralog selectivity, since p300 and CBP are nearly identical.

Targeting Transcriptional Coactivators p300/CBP: Small-Molecule Inhibitors or Bifunctional Proximity-Inducing Modalities? ↗

Direct-to-Biology Screening Yields a GRP78 Inhibitor That Spares Other HSP70 Isoforms

  • Isoform selectivity within the highly conserved HSP70 family is notoriously hard; the team targeted the peptide-binding pocket of GRP78's substrate-binding domain.
  • A direct-to-biology workflow, testing crude library reactions without purification, pointed to compound 12.
  • It engages GRP78 in biochemical, biophysical and cellular thermal shift assays, is selective over other tested HSP70s, and perturbs unfolded protein response signaling with selective killing of A549 cells.
💡 Points

Going after the substrate pocket rather than the ATP site is the sensible way to buy HSP70 selectivity, and D2B makes iterating on it cheap. The cell-line-selective killing is the part I'd treat cautiously: it could reflect UPR dependence or something off-target. Orthogonal engagement data like CETSA are encouraging; I'd want a close inactive analog next.

Development of Isoform-Selective GRP78 Inhibitors from a Direct-to-Biology Strategy ↗

A '2-in-1' PROTAC Folds the Cereblon Ligand into the HDAC8 Cap to Shrink the Degrader

  • Instead of tethering two ligands, the cereblon-binding motif is built into the capping group of an HDAC8 inhibitor, so one structural element engages both proteins.
  • Versus the group's first-generation degrader, the compact analogs are smaller, more selective and more drug-like.
  • They degrade HDAC8 potently in vivo.
💡 Points

Most of us accept PROTAC bulk as a tax; fusing the E3 ligand into the warhead's cap group attacks that directly and is a transferable idea for other zinc-enzyme targets. The question I'd press is whether the shared motif compromises either binding event or cereblon neosubstrate selectivity. If in vivo degradation holds with better properties, the 'linkerless' direction deserves more attention.

A 2-in-1 Strategy for the Discovery of Compact HDAC8 Protac Degraders ↗

BmTACs Ride Age-Upregulated Transcytosis to Deliver a ROS-Activated DAPK1 Degrader into the Brain

  • Brain delivery is the main barrier for degraders in neurodegeneration; BmTACs attach a macrocyclic peptide shuttle that exploits caveolae-mediated transcytosis, which rises with age in brain endothelium.
  • A reactive-oxygen-species-responsive cage on the VHL ligand keeps the PROTAC inactive until it reaches high-ROS tissue.
  • The platform is designed to remove activated DAPK1 selectively in the aging brain.
💡 Points

Two gating layers, shuttle for entry and ROS cage for activation, is clever systems design, but it moves the problem from medicinal chemistry to conjugate CMC and PK. I'd look hard at the unmasked-PROTAC fraction in periphery and at the shuttle's dependence on aged-endothelium biology, which could narrow the patient window. A real step for CNS degraders if the in vivo data hold up.

Blood-Brain Barrier-Permeable Macrocyclic Chimeras (BmTACs) for Targeted Protein Degradation in the Aging Brain ↗

DT-9081: Scaffold Hopping Delivers an Oral EP4 Antagonist That Has Cleared Phase I

  • EP4 blockade is an immuno-oncology idea built on PGE2-driven immune suppression in tumors.
  • Scaffold hopping gave a new chemical series with better activity and pharmacokinetics, and SAR work led to DT-9081.
  • It combines potent antagonism, favorable ADME and a clean preclinical safety profile, and has completed a phase I monotherapy trial in solid cancers.
💡 Points

This paper is the full med-chem story behind a compound that already has human data, which is rarer and more useful than most 'discovery of' papers. EP4 is crowded, so the interesting part is how the new series differentiates on PK and safety against earlier antagonists. I'd read it for the scaffold-hop logic and watch whether phase I translates into combination activity with checkpoint blockade.

Discovery of DT-9081, a Potent and Orally Bioavailable Small Molecule Antagonist of the EP4 Receptor for the Treatment of Solid Cancers ↗

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Computational & AI

1 article

Boltz-2 Co-folding Narrows an 867-Compound Library to 40 Picks, and Most Turn Out Active

  • The authors tested whether a co-folding model can replace docking for triage, applying Boltz-2 to the cancer-linked enzyme AKR1B10.
  • From a chemically diverse library of 867 candidates, they chose 40 by predicted affinity plus a diversity filter.
  • About 70% of those tested showed inhibition at low-micromolar or better, and several submicromolar inhibitors with novel scaffolds emerged.
💡 Points

A 70% confirmation rate from 40 compounds is a striking number for virtual screening, though the starting library was already small and the target is an enzyme with a lipophilic, forgiving pocket. I'd want to see the same experiment on a harder target and against a docking baseline run on identical compounds. Still, a tractable assay count and novel chemotypes make this an easy workflow to copy for hit finding.

Efficient Discovery of Potent AKR1B10 Inhibitors Using Co-folding Model Boltz-2 ↗

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Industry News

2 articles

Sanofi Pays Regeneron $1B Upfront to Add Four Long-Acting Immunology Antibodies to the Dupixent Alliance

  • Sanofi and Regeneron expanded their alliance with $1 billion upfront and up to $7 billion in development, regulatory and commercial milestones.
  • The deal adds four antibodies: clinical-stage long-acting IL-13 REGN20423, a long-acting IL-4xIL-13 bispecific and two preclinical long-acting antibodies against IL-4 pathway targets.
  • Regeneron leads R&D, Sanofi leads global commercialization, and costs and profits split 50:50.
💡 Points

This is Sanofi buying a Dupixent successor from the one partner that already knows how to make that franchise work, ahead of the 2031 US patent expiry. Paying $1B for a Phase 1 antibody and three preclinical ones is really a bet on long-acting dosing as the differentiator against a crowded type 2 inflammation field. For Regeneron it is non-dilutive funding plus a reconfirmed partner; I'd watch whether Sanofi's other immunology assets get de-prioritized.

Sanofi pays Dupixent partner Regeneron $1B upfront for 4 early-stage assets to ignite R&D ↗

Lilly's Amylin–Zepbound Combo Posts Record Weight Loss in Phase 2b, but Dropouts Rise

  • EloraTZP combines the amylin agonist eloralintide with tirzepatide; in adults with obesity and type 2 diabetes it beat tirzepatide alone on weight loss and A1C at 48 weeks, with up to 23.3% weight loss at the top dose.
  • Discontinuations due to adverse events were higher in the combination arms, mostly GI-related during dose escalation, which raises tolerability questions.
  • Lilly plans to start phase 3 in the fourth quarter of 2026.
💡 Points

Beating retatrutide's diabetes-population number with an amylin add-on strengthens Lilly's case that obesity's next act is combinations, ahead of AbbVie and Pfizer amylin plays. The dropout rate is the real commercial variable: if titration cannot tame GI effects, a headline efficacy edge shrinks in practice. Phase 3 design, especially the dose-escalation schedule, will tell us how much of this is deliverable.

STAT+: Eli Lilly's Zepbound combined with amylin drug led to significant weight loss in mid-stage trial ↗